Medicinal and Gin Twist were emergencies two and three respectively in Australia's richest two-year-old race.
Ben Hayes was disappointed neither one of the pair made the field as there was no scratchings from the 16 two-year-olds that contested last Saturday's Group 1 contest.
"It's a shame we didn't get in," Hayes said.
"You win a Stakes race, and you normally get in, but this year it was just so open.
"They were taking their turns in winning and with the prizemoney so strong in New South Wales, we ended up just missing out."
With Gin Twist the third emergency for the Golden Slipper, the Hayes boys made the decision to keep the filly in Melbourne.
A winner down the Flemington straight on February 28, Gin Twist returns to that track on Saturday to contest the Group 3 TBV Thoroughbred Breeders Stakes (1200m).